Riboregulator Design and Analysis

1. RNP-Based Control Systems for Genetic Circuits in Synthetic Biology Beyond CRISPR
Trevor. R Simmons, Andrew D. Ellington, and Lydia M. Contreras

2. Computational Design of RNA Toehold-Mediated Translation Activators
Kaiyue Wu, Zhaoqing Yan, and Alexander A. Green

3. Design of RNA-Based Translational Repressors
Seongho Hong, Dongwon Park, Soma Chaudhary, Griffin McCutcheon, Alexander A. Green, and Jongmin Kim

4. Design of Ribocomputing Devices for Complex Cellular Logic
Griffin McCutcheon, Soma Chaudhary, Seongho Hong, Dongwon Park, Jongmin Kim, and Alexander A. Green

5. Computational Design of Small Transcription Activating RNAs (STARs)
Baiyang Liu and James Chappell

6. Design and Assembly of Multi-Level Transcriptional and Translational Regulators for Stringent Control of Gene Expression
F. Veronica Greco, Thea Irvine, Claire S. Grierson, and Thomas E. Gorochowski

7. Model-Based Design of Synthetic Antisense RNA for Predictable Gene Repression
Tae Seok Moon

8. Design of a Toolbox of RNA Thermometers
Shaunak Sen, Abhilash Patel, and Krishan Kumar Gola

9. Development of Synthetic Riboswitches to Guide the Evolution of Metabolite Production in Microorganisms
Minsun Kim, Sungho Jang, and Gyoo Yeol Jung

10. Efficient Method to Identify Synthetic Riboswitches Using RNA-Based Capture-SELEX Combined with In Vivo Screening
Janice Kramat and Beatrix Suess

11. RNA Design Principles for Riboswitches that Regulate RNase P-Mediated tRNA Processing
Anna Ender, Peter Stadler, Mario Mörl, and Sven Findeiß

12. Design, Characterization, and Application of Targeted Gene Activation in Bacteria Using a Modular CRISPRa System
Maria Claudia Villegas Kcam and James Chappell

13. Reprogramming TracrRNAs for In Vitro RNA Detection and In Vivo Transcriptional Recording
Chunlei Jiao and Chase L. Beisel

14. Harnessing CRISPR-Cas9 for Epigenetic Engineering
Rosa S. Guerra-Resendez and Isaac B. Hilton

15. RNA Structure Prediction, Analysis, and Design: An Introduction to Web-Based Tools
Raphael Angelo I. Zambrano, Carmen Hernandez-Perez, and Melissa K. Takahashi

16. Single-Molecule FRET Studies of RNA Structural Rearrangements and RNA-RNA Interactions
Ewelina M. Małecka, Boyang Hua, and Sarah A. Woodson

17. Cotranscriptional RNA Chemical Probing